Academic Computational Biology Featured

Yet Another Trajectory Interface (YetI)

Software Developer 2 years 3 months

Feature-engineering tool for biomolecular simulations, accelerating analysis of multi-TB datasets. Built as a focused Python 3 successor to NucleoSim.

Key Responsibilities

Planned and implemented the tool's logic using agile development paradigms to iteratively address feature-engineering needs in biomolecular simulations.
Applied advanced knowledge of physics and chemistry to design new features based on pre-existing ones, enhancing the depth of analysis.
Optimized feature extraction techniques by implementing multi-threading support, speeding up analysis by a factor of 3.
Documented tool functionality and usage for academic dissemination and reproducibility.

Technology Stack

Python

numpy mdtraj unittest threading

CI/CD Pipelines

GitHub Actions TravisCI

Key Responsibilities

Technology Stack

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